Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bgr_05070 | Bgr_05080 | Bgr_05070 | Bgr_05080 | Hypothetical protein. | Hypothetical protein. | 0.948 |
Bgr_05070 | mrcA1 | Bgr_05070 | Bgr_05090 | Hypothetical protein. | Penicillin-binding protein. | 0.776 |
Bgr_05080 | Bgr_05070 | Bgr_05080 | Bgr_05070 | Hypothetical protein. | Hypothetical protein. | 0.948 |
Bgr_05080 | mrcA1 | Bgr_05080 | Bgr_05090 | Hypothetical protein. | Penicillin-binding protein. | 0.776 |
dacA1 | dacA2 | Bgr_07000 | Bgr_10840 | Penicillin-binding protein; Belongs to the peptidase S11 family. | Penicillin-binding protein; Belongs to the peptidase S11 family. | 0.928 |
dacA1 | mrcA1 | Bgr_07000 | Bgr_05090 | Penicillin-binding protein; Belongs to the peptidase S11 family. | Penicillin-binding protein. | 0.923 |
dacA1 | mrcA2 | Bgr_07000 | Bgr_10570 | Penicillin-binding protein; Belongs to the peptidase S11 family. | Penicillin-binding protein. | 0.920 |
dacA2 | dacA1 | Bgr_10840 | Bgr_07000 | Penicillin-binding protein; Belongs to the peptidase S11 family. | Penicillin-binding protein; Belongs to the peptidase S11 family. | 0.928 |
dacA2 | mrcA1 | Bgr_10840 | Bgr_05090 | Penicillin-binding protein; Belongs to the peptidase S11 family. | Penicillin-binding protein. | 0.909 |
dacA2 | mrcA2 | Bgr_10840 | Bgr_10570 | Penicillin-binding protein; Belongs to the peptidase S11 family. | Penicillin-binding protein. | 0.907 |
ftsI | ftsW | Bgr_14030 | Bgr_13980 | Penicillin-binding protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.991 |
ftsI | mrcA1 | Bgr_14030 | Bgr_05090 | Penicillin-binding protein. | Penicillin-binding protein. | 0.904 |
ftsI | mrcA2 | Bgr_14030 | Bgr_10570 | Penicillin-binding protein. | Penicillin-binding protein. | 0.830 |
ftsI | murA | Bgr_14030 | Bgr_17360 | Penicillin-binding protein. | UDP-N-acetylglucosamine 1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.722 |
ftsI | murG | Bgr_14030 | Bgr_13970 | Penicillin-binding protein. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.870 |
ftsW | ftsI | Bgr_13980 | Bgr_14030 | Cell division protein FtsW; Belongs to the SEDS family. | Penicillin-binding protein. | 0.991 |
ftsW | mrcA1 | Bgr_13980 | Bgr_05090 | Cell division protein FtsW; Belongs to the SEDS family. | Penicillin-binding protein. | 0.787 |
ftsW | mrcA2 | Bgr_13980 | Bgr_10570 | Cell division protein FtsW; Belongs to the SEDS family. | Penicillin-binding protein. | 0.680 |
ftsW | murA | Bgr_13980 | Bgr_17360 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylglucosamine 1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.780 |
ftsW | murG | Bgr_13980 | Bgr_13970 | Cell division protein FtsW; Belongs to the SEDS family. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.986 |
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