STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_06280Putative permease, YjgP/YjgQ family. (396 aa)    
Predicted Functional Partners:
Bgr_06270
Putative permease, YjgP/YjgQ family.
 
 0.999
Bgr_00160
ABC transporter, ATP-binding protein.
   
 0.990
lptD
Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.878
Bgr_06250
Peptidyl-prolyl cis-trans isomerase.
 
     0.671
Bgr_10770
Hypothetical membrane protein.
  
     0.664
Bgr_00140
Hypothetical protein.
  
   
 0.663
Bgr_00150
OstA family protein.
 
   
 0.627
Bgr_11610
Lipid A biosynthesis lauroyl acyltransferase.
 
     0.602
Bgr_16380
Outer membrane protein, porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.599
Bgr_18540
Hypothetical protein.
  
     0.594
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.