STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bgr_09000Hypothetical protein. (298 aa)    
Predicted Functional Partners:
Bgr_09010
Hypothetical protein.
       0.678
gp20-2
Phage protein Gp20.
       0.678
gp19-2
Phage protein Gp19.
       0.664
Bgr_16590
Two-component response regulator.
   
 
 0.630
Bgr_11910
Sensor histidine kinase.
    
 
 0.485
Bgr_04780
Sensor diguanylate cyclase/phosphodiesterase.
  
  
 0.473
sigH
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.416
Bgr_00290
Sensor histidine kinase protein.
    
 
 0.413
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.