STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDFeS assembly protein SufD. (420 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC.
 
 
 0.999
sufB
FeS assembly protein SufB.
 
 
0.996
nifS2
Nitrogenase cofactor synthesis protein NifS2; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.990
Bgr_10670
Hypothetical protein.
 
   
 0.905
Bgr_11340
Nitrogen-fixing NifU-like protein.
  
  
 0.765
Bgr_11630
Putative FeS assembly scaffold SufA; Belongs to the HesB/IscA family.
  
 
 0.754
Bgr_04950
Cysteine desulfuration protein SufE.
 
 
 0.644
Bgr_12190
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.600
sthIM
Adenine specific DNA methylase Mod.
       0.537
mrp
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     
 0.512
Your Current Organism:
Bartonella grahamii
NCBI taxonomy Id: 634504
Other names: B. grahamii as4aup, Bartonella grahamii as4aup, Bartonella grahamii str. as4aup, Bartonella grahamii strain as4aup
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.