STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnpARibonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (140 aa)    
Predicted Functional Partners:
rpmH
PFAM: ribosomal protein L34; KEGG: ava:Ava_3432 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
 
  
 0.975
ACC80270.1
PFAM: 60 kDa inner membrane insertion protein; KEGG: ana:alr3415 60kDa inner-membrane protein.
 
  
 0.938
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
  
 0.855
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
  
 0.805
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
  
 0.803
rpsL
Ribosomal protein S12/S23; With S4 and S5 plays an important role in translational accuracy.
   
    0.794
rpsP
PFAM: ribosomal protein S16; KEGG: ava:Ava_4357 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
  
 0.792
ACC80271.1
KEGG: ana:alr3414 hypothetical protein.
       0.791
ACC80269.1
PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: ana:alr3416 putative spoIIIJ-associated protein.
  
  
 0.788
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
    0.770
Your Current Organism:
Nostoc punctiforme
NCBI taxonomy Id: 63737
Other names: N. punctiforme PCC 73102, Nostoc punctiforme ATCC 29133, Nostoc punctiforme PCC 73102, Nostoc sp. (strain ATCC 29133 / PCC 73102), Nostoc sp. ATCC 29133, Nostoc sp. PCC 73102
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