STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_0350enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (268 aa)    
Predicted Functional Partners:
SVI_1515
Sensory box histidine kinase/response regulator.
   
 
 0.794
SVI_1329
Sensory box histidine kinase/response regulator.
   
 
 0.791
SVI_0979
Sensory box histidine kinase/response regulator.
    
 
 0.789
SVI_1799
Sodium/solute symporter family protein.
  
 
 0.789
SVI_1800
Sensor histidine kinase/response regulator.
  
 
 0.789
atoB
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.786
SVI_3181
Sensor histidine kinase/response regulator.
   
 
 0.786
SVI_2262
Sensor histidine kinase/response regulator.
    
 
 0.783
fadA-3
Fatty oxidation complex, beta subunit; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.783
torS
Sensor histidine kinase/response regulator TorS.
    
 
 0.783
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.