STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBRibose ABC transporter, periplasmic D-ribose-binding protein. (292 aa)    
Predicted Functional Partners:
rbsC
Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.999
rbsA
Ribose ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.995
rbsD
Ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.975
SVI_3259
Sugar-binding protein, putative.
  
  
  0.935
SVI_1515
Sensory box histidine kinase/response regulator.
   
 
 0.929
SVI_1329
Sensory box histidine kinase/response regulator.
   
 
 0.927
SVI_3181
Sensor histidine kinase/response regulator.
   
 
 0.927
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.926
torS
Sensor histidine kinase/response regulator TorS.
   
 
 0.909
SVI_0979
Sensory box histidine kinase/response regulator.
   
 
 0.889
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.