STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_0945HlyD family secretion protein. (469 aa)    
Predicted Functional Partners:
SVI_0944
Toxin secretion ATP-binding protein.
 
 0.977
SVI_0946
RTX toxin, putative.
 
    0.914
SVI_3378
HlyD family secretion protein.
  
  
 
0.911
SVI_3379
Toxin secretion ABC transporter protein, HlyB family.
 
 0.902
SVI_3818
Toxin secretion ATP-binding protein.
 
 0.901
rtxB
Toxin secretion ATP-binding protein.
 
 0.900
aggA
Agglutination protein.
 
 
 0.823
SVI_3820
Type I secretion outer membrane protein, TolC family.
 
 
 0.798
tolC
Outer membrane protein TolC.
  
 
 0.517
SVI_3846
RTX toxin, putative.
 
    0.503
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.