STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pduLPropanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (210 aa)    
Predicted Functional Partners:
pduW
Propanediol utilization: propionate kinase.
   
 0.997
tdcD
Propionate kinase; Catalyzes the conversion of propionyl phosphate and ADP to propionate and ATP.
   
 0.989
pduP
Propanediol utilization: CoA-dependent propionaldehyde dehydrogenase.
 
  
 0.988
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
 0.987
pduO
Propanediol utilization: B12 related; Belongs to the Cob(I)alamin adenosyltransferase family.
 
  
 0.939
pduK
Propanediol utilization protein PduK.
 
  
 0.934
pduN
Propanediol utilization: polyhedral bodies.
 
   
 0.918
pflF
Putative formate acetyltransferase 3 (pyruvate formate lyase 3).
    
 0.909
pflB
Formate acetyltransferase 1.
    
 0.909
pflD
Formate acetyltransferase 2.
    
 0.909
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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