STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cts1ST6SS protein Cts1S; SciH homologue, Duf770 component of T6SS. (172 aa)    
Predicted Functional Partners:
cts1B
T6SS protein Cts1B; SciI homologue, Duf877 component of T6SS.
 
 0.995
cts2B
T6SS protein Cts2B; Duf877 component of T6SS.
 
 0.986
cts1E
ImpE family T6SS protein Cts1E; SciE homologue, component of T6SS.
 
   0.976
cts1U
IcmF family T6SS protein Cts1I; HMMPfam hit to PF06761, ImcF-related, score 9.1e-58.
 
  
 0.976
cts1H
Hcp family T6SS protein Cts1H; Hcp component of T6SS. Similar to SciK/M.
 
 
 0.971
cts2H
Hcp family T6SS protein Cts2H; Hcp component of the T6SS.
 
 
 0.950
cts1M
T6SS protein Cts1M; SciO component of T6SS.
 
  
 0.948
cts1A
T6SS protein Cts1A; SciA homologue, ImpA component of T6SS.
 
  
 0.933
cts1D
T6SS lysozyme-related protein Cts1D; SciD homologue, component of T6SS.
 
  
 0.931
cts2A
T6SS protein Cts2A; ImpA component of T6SS.
 
  
 0.923
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.