STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
espGT3SS effector protein EspG; Alpha-tubulin-specific protease. (398 aa)    
Predicted Functional Partners:
cesT
T3SS chaperone CesT.
      
 0.696
espF
T3SS effector protein EspF.
      
 0.618
espH
T3SS effector protein EspH.
      
 0.607
tir
Tir, translocated intimin receptor.
      
 0.599
espA
T3SS translocator protein EspA.
      
 0.593
espZ
T3SS effector protein EspZ.
      
 0.592
espI
T3SS effector protein NleA/EspI.
      
 0.568
eae
IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches.
      
 0.562
espB
T3SS effector protein EspB.
      
 0.518
espJ
T3SS effector protein EspJ.
      
 0.499
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.