Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cesF | eae | ROD_29882 | ROD_29831 | T3SS chaperone CesF. | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | 0.421 |
cesF | espF | ROD_29882 | ROD_29701 | T3SS chaperone CesF. | T3SS effector protein EspF. | 0.609 |
cesF | espG | ROD_29882 | ROD_29681 | T3SS chaperone CesF. | T3SS effector protein EspG; Alpha-tubulin-specific protease. | 0.491 |
cesF | espH | ROD_29882 | ROD_29891 | T3SS chaperone CesF. | T3SS effector protein EspH. | 0.499 |
cesF | espZ | ROD_29882 | ROD_29961 | T3SS chaperone CesF. | T3SS effector protein EspZ. | 0.416 |
cesF | tir | ROD_29882 | ROD_29851 | T3SS chaperone CesF. | Tir, translocated intimin receptor. | 0.551 |
eae | cesF | ROD_29831 | ROD_29882 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS chaperone CesF. | 0.421 |
eae | espA | ROD_29831 | ROD_29761 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS translocator protein EspA. | 0.619 |
eae | espB | ROD_29831 | ROD_29741 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS effector protein EspB. | 0.594 |
eae | espD | ROD_29831 | ROD_29751 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS translocator protein EspD. | 0.499 |
eae | espF | ROD_29831 | ROD_29701 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS effector protein EspF. | 0.593 |
eae | espG | ROD_29831 | ROD_29681 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS effector protein EspG; Alpha-tubulin-specific protease. | 0.562 |
eae | espH | ROD_29831 | ROD_29891 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS effector protein EspH. | 0.499 |
eae | espI | ROD_29831 | ROD_03401 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS effector protein NleA/EspI. | 0.493 |
eae | espZ | ROD_29831 | ROD_29961 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | T3SS effector protein EspZ. | 0.491 |
eae | tir | ROD_29831 | ROD_29851 | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | Tir, translocated intimin receptor. | 0.995 |
espA | eae | ROD_29761 | ROD_29831 | T3SS translocator protein EspA. | IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches. | 0.619 |
espA | espB | ROD_29761 | ROD_29741 | T3SS translocator protein EspA. | T3SS effector protein EspB. | 0.881 |
espA | espD | ROD_29761 | ROD_29751 | T3SS translocator protein EspA. | T3SS translocator protein EspD. | 0.938 |
espA | espF | ROD_29761 | ROD_29701 | T3SS translocator protein EspA. | T3SS effector protein EspF. | 0.764 |
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