STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
espFT3SS effector protein EspF. (301 aa)    
Predicted Functional Partners:
espA
T3SS translocator protein EspA.
     
 0.764
espB
T3SS effector protein EspB.
     
 0.745
espD
T3SS translocator protein EspD.
     
 0.674
espG
T3SS effector protein EspG; Alpha-tubulin-specific protease.
      
 0.618
tir
Tir, translocated intimin receptor.
      
 0.618
espH
T3SS effector protein EspH.
      
 0.618
cesF
T3SS chaperone CesF.
      
 0.609
espI
T3SS effector protein NleA/EspI.
      
 0.598
eae
IS256 family transposase (pseudogene); 29 bp terminal inverted repeat of IS285 remnant,contains 9 mismatches.
      
 0.593
espZ
T3SS effector protein EspZ.
      
 0.593
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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