STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
escCT3SS structural protein EscC. (512 aa)    
Predicted Functional Partners:
escJ
T3SS structural protein EscJ.
 
 
 0.997
cesD
T3SS chaperone CesD.
 
  
 0.951
escT
T3SS structural protein EscT.
 
 
 0.951
escV
T3SS structural protein EscV.
 
 
 0.950
escS
T3SS structural protein EscS.
 
 
 0.944
escD
T3SS structural protein EscD.
  
  
 0.938
escU
T3SS structural protein EscU.
 
  
 0.912
escN
T3SS translocator EscN.
 
 
 0.900
escR
T3SS structural protein EscR.
 
 
 0.847
gspC
Putative T2SS protein C.
  
 
 0.846
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.