Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
espM1 | espM3 | ROD_40871 | ROD_31791 | Putative T3SS effector protein EspM1 (pseudogene); Pseudogene, fragmented by three premature stop codons and a frameshift mutation. | Putative T3SS effector protein NleG (pseudogene); HMMPfam hit to PF06416, Protein of unknown function DUF1076, score 6.6e-62. | 0.618 |
espM1 | espO | ROD_40871 | ROD_40881 | Putative T3SS effector protein EspM1 (pseudogene); Pseudogene, fragmented by three premature stop codons and a frameshift mutation. | Putative T3SS effector protein EspO; Similar to OspE1 and OspE2 from Shigella and EspO1-1 and EspO1-2 from Sakai. | 0.715 |
espM3 | espM1 | ROD_31791 | ROD_40871 | Putative T3SS effector protein NleG (pseudogene); HMMPfam hit to PF06416, Protein of unknown function DUF1076, score 6.6e-62. | Putative T3SS effector protein EspM1 (pseudogene); Pseudogene, fragmented by three premature stop codons and a frameshift mutation. | 0.618 |
espM3 | espO | ROD_31791 | ROD_40881 | Putative T3SS effector protein NleG (pseudogene); HMMPfam hit to PF06416, Protein of unknown function DUF1076, score 6.6e-62. | Putative T3SS effector protein EspO; Similar to OspE1 and OspE2 from Shigella and EspO1-1 and EspO1-2 from Sakai. | 0.416 |
espO | espM1 | ROD_40881 | ROD_40871 | Putative T3SS effector protein EspO; Similar to OspE1 and OspE2 from Shigella and EspO1-1 and EspO1-2 from Sakai. | Putative T3SS effector protein EspM1 (pseudogene); Pseudogene, fragmented by three premature stop codons and a frameshift mutation. | 0.715 |
espO | espM3 | ROD_40881 | ROD_31791 | Putative T3SS effector protein EspO; Similar to OspE1 and OspE2 from Shigella and EspO1-1 and EspO1-2 from Sakai. | Putative T3SS effector protein NleG (pseudogene); HMMPfam hit to PF06416, Protein of unknown function DUF1076, score 6.6e-62. | 0.416 |