STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_32871ABC transporter, substrate-binding protein. (318 aa)    
Predicted Functional Partners:
ROD_32891
ABC transporter, ATP-binding protein.
 
 0.992
ROD_32901
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.991
ROD_32911
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.991
barA
Two-component sensor kinase/response regulator.
  
 
 0.848
rcsC
Two-component system response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
  
 
 0.772
ROD_05831
Putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.756
alsC
D-allose transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.756
araH
L-arabinose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.752
rbsC
Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.733
rbsD
Putative ribose transport/metabolism protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.733
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
Server load: low (10%) [HD]