STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphAClass B acid phosphatase; Dephosphorylates several organic phosphate monoesters. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds (By similarity). (237 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein; Belongs to the ribF family.
     
  0.900
mdfA
Multidrug translocase MdfA (pseudogene); HMMPfam hit to PF07690, Major facilitator superfamily MFS-1, score 2.3e-25.
     
  0.900
ssuE
FMN reductase (sulfate starvation-induced protein.
     
  0.900
ribE
Riboflavin synthase alpha chain.
     
  0.900
fre
NAD(P)H-flavin reductase.
     
  0.900
ROD_39391
Haloacid dehalogenase-like hydrolase.
     
  0.900
fimA
Fimbrial major subunit FimA.
  
     0.651
ROD_28071
Putative voltage gated chloride channel protein.
  
     0.607
csgB
Minor curlin subunit.
  
     0.606
ROD_12541
Conserved hypothetical protein.
  
     0.599
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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