STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylED-xylose-proton symporter (D-xylose transporter); Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (491 aa)    
Predicted Functional Partners:
ROD_12791
Major facilitator superfamily protein.
  
     0.623
cts1V
T6SS protein Cts1V; SciG homologue, ClpV ATPase component of T6SS; Belongs to the ClpA/ClpB family.
      
 0.615
pflD
Formate acetyltransferase 2.
      
 0.615
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.596
deoR
Deoxyribose operon repressor.
   
  
 0.566
glnB
Nitrogen regulatory protein p-II; Belongs to the P(II) protein family.
      
 0.560
ROD_31611
Major Facilitator Superfamily transporter; Similar to 4-hydroxybenzoate transporters.
  
   
 0.530
cheA
Chemotaxis protein CheA.
      
 0.499
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.460
sspB
Stringent starvation protein B.
      
 0.416
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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