STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
regATranscriptional regulator of virulence RegA. (276 aa)    
Predicted Functional Partners:
adcA
Putative adhesin autotransporter.
 
   
 0.889
ROD_44041
Putative membrane protein.
  
     0.726
ROD_25701
Large repetitive protein; Probably secreted by adjacent type I secretion system.
  
     0.700
araC
Arabinose operon regulatory protein.
  
   
 0.663
kfcC
Putative fimbrial subunit.
     
 0.626
ROD_35181
Putative transcriptional regulator.
  
     0.612
ROD_48311
Putative AraC-family transcriptional regulator.
  
     0.594
ROD_34971
Putative fimbrial subunit.
  
     0.561
rhaR
L-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose.
  
 
 0.535
ROD_35071
ABC transporter ATP-binding/permease protein.
  
     0.523
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.