STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP65571.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
 0.981
AKP65570.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.881
AKP65573.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.832
AKP65569.1
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
  
    0.768
rlmH
rRNA methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
   
 0.652
AKP65568.1
GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.595
AKP63691.1
Membrane protein insertion efficiency factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.531
AKP65595.1
Recombinase RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.519
AKP65898.1
16S rRNA methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
   
 0.485
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.464
Your Current Organism:
Lactobacillus koreensis
NCBI taxonomy Id: 637971
Other names: DSM 27983, JCM 16448, KCTC 13530, L. koreensis, Lactobacillus koreensis Bui et al. 2011, strain DCY50
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.