STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ48151.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
mmdA
methylmalonyl-CoA decarboxylase alpha subunit; COG: COG4799; Pfam: PF01039; InterPro: IPR000022.
       0.727
gcdC
Biotin-requiring enzyme; COG: COG0511; Pfam: PF00364; InterPro: IPR000089.
       0.615
mce
methylmalonyl-CoA epimerase; COG: COG0346; Pfam: PF00903; InterPro: IPR004360.
       0.546
EEQ48154.1
LAO/AO transport system ATPase; COG: COG1703; Pfam: PF03308; InterPro: IPR005129.
       0.459
EEQ48147.1
Hypothetical protein.
       0.458
EEQ48148.1
Hypothetical protein.
       0.458
EEQ48149.1
Permease, YjgP/YjgQ family; COG: COG0795; Pfam: PF03739; InterPro: IPR005495.
       0.458
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.