STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAI81411.1Conserved hypothetical protein. (146 aa)    
Predicted Functional Partners:
BAI81412.1
Peptidase, M48 family.
       0.773
BAI81413.1
sigma-E factor negative regulatory protein RseC.
       0.773
BAI81414.1
Multiple antibiotic transporter, MarC family; TC 9.B.10 The 6 TMS Putative MarC Transporter (MarC) Family.
       0.773
BAI81407.1
Tetratricopeptide repeat protein.
  
    0.769
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.767
BAI81409.1
Methyltransferase.
       0.767
BAI81410.1
Hydroxypyruvate reductase.
       0.767
ribF
Riboflavin biosynthesis regulatory protein RibF; Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
       0.762
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.762
BAI81406.1
Conserved hypothetical protein.
       0.762
Your Current Organism:
Deferribacter desulfuricans
NCBI taxonomy Id: 639282
Other names: D. desulfuricans SSM1, Deferribacter desulfuricans SSM1, Deferribacter desulfuricans str. SSM1, Deferribacter desulfuricans strain SSM1
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