STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0398KEGG: azc:AZC_0691 putative nitrate transport protein. (383 aa)    
Predicted Functional Partners:
Snov_0401
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: azc:AZC_0684 nitrate transport ATP-binding subunits C and D protein; SMART: AAA ATPase.
  
 0.970
Snov_0397
KEGG: azc:AZC_0692 two-component response regulator; PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver.
 
  
 0.956
Snov_0400
KEGG: xau:Xaut_2503 nitrate ABC transporter, inner membrane subunit; TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
  
 0.848
Snov_0406
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: xau:Xaut_2497 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.815
Snov_0403
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azc:AZC_0682 putative nitrite reductase.
 
  
 0.787
Snov_0859
KEGG: msl:Msil_0769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.759
Snov_0855
KEGG: rpf:Rpic12D_2478 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.744
Snov_4276
KEGG: met:M446_3499 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.739
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
  
 0.726
Snov_0222
ABC transporter related protein; KEGG: rci:RCIX444 putative ABC-type sulfonate import system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.707
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.