STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0567KEGG: azc:AZC_0377 putative glycosyltransferase. (641 aa)    
Predicted Functional Partners:
Snov_3171
Cellulose synthase BcsB; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.753
Snov_0718
KEGG: xau:Xaut_3171 gene transfer agent (GTA) orfg15, like protein.
 
  
 0.750
Snov_0717
KEGG: xau:Xaut_3170 NlpC/P60 family phage cell wall peptidase; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein.
  
   
 0.706
Snov_0719
KEGG: nwi:Nwi_0791 hypothetical protein.
  
     0.634
Snov_0668
KEGG: rpc:RPC_1776 hypothetical protein.
  
    0.619
Snov_0712
KEGG: xau:Xaut_3162 gene transfer agent (GTA) like protein.
  
    0.610
Snov_0711
KEGG: xau:Xaut_3161 TP901-1 family phage major tail protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1.
  
     0.604
Snov_0715
PFAM: conserved hypothetical protein; KEGG: xau:Xaut_3168 hypothetical protein.
  
     0.588
Snov_2516
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold domain protein; GAF domain protein; GGDEF domain containing protein; KEGG: azc:AZC_3085 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; GAF domain protein.
  
  
 0.582
Snov_0699
PFAM: protein of unknown function DUF264; KEGG: azc:AZC_1105 hypothetical protein.
  
    0.578
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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