STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1041PFAM: ABC-2 type transporter; KEGG: xau:Xaut_0025 ABC-2 type transporter. (280 aa)    
Predicted Functional Partners:
Snov_1042
KEGG: msl:Msil_0009 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.973
Snov_1045
KEGG: mex:Mext_1846 hypothetical protein.
 
   
 0.891
Snov_1040
KEGG: rpe:RPE_4686 hypothetical protein.
 
     0.890
Snov_1044
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: xau:Xaut_0027 YVTN beta-propeller repeat-containing protein.
 
   
 0.883
Snov_1043
KEGG: psa:PST_2279 uncharacterized copper-binding protein.
 
     0.873
Snov_1047
PFAM: extracellular solute-binding protein family 3; KEGG: mno:Mnod_5973 putative ABC transporter periplasmic solute-binding protein.
 
     0.838
Snov_1048
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_1784 binding-protein-dependent transport systems inner membrane component.
 
     0.820
Snov_2583
KEGG: bja:bll4706 hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: SMP-30/Gluconolaconase/LRE domain protein.
 
   
 0.786
Snov_4199
KEGG: mrd:Mrad2831_4199 YVTN beta-propeller repeat-containing protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein.
 
   
 0.769
Snov_1035
KEGG: mno:Mnod_5977 PQQ-dependent dehydrogenase, methanol/ethanol family; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone.
 
     0.767
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.