STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1379PFAM: Peptidase M75, Imelysin; KEGG: xau:Xaut_3194 hypothetical protein. (374 aa)    
Predicted Functional Partners:
Snov_1378
PFAM: protein of unknown function DUF1111; KEGG: azc:AZC_2746 putative thiol oxidoreductase.
 
  
 0.977
Snov_1376
PFAM: Peptidase M75, Imelysin; KEGG: azc:AZC_2744 uncharacterized iron-regulated protein.
 
  
 0.972
Snov_1380
PFAM: conserved hypothetical protein; KEGG: azc:AZC_2748 hypothetical protein.
 
  
 0.970
Snov_1377
PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: azc:AZC_2745 putative metallo-oxidoreductase protein.
 
     0.842
Snov_3423
KEGG: xau:Xaut_1645 hypothetical protein.
  
     0.547
Snov_0362
KEGG: azc:AZC_0891 glycosyl hydrolase family 2 protein.
 
     0.514
Snov_3119
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
     0.464
Snov_3074
KEGG: xau:Xaut_2318 carbohydrate-binding family V/XII protein.
  
     0.460
Snov_1621
PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein.
  
     0.452
Snov_2241
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_4423 hypothetical protein.
  
     0.445
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.