STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1622PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; KEGG: xau:Xaut_3828 lytic transglycosylase catalytic. (720 aa)    
Predicted Functional Partners:
Snov_3159
PFAM: Extensin family protein; KEGG: azc:AZC_4252 hypothetical protein.
  
     0.592
Snov_1081
KEGG: azc:AZC_4306 hypothetical protein.
  
     0.537
Snov_0275
PFAM: Extensin family protein; KEGG: xau:Xaut_2474 extensin family protein.
  
     0.475
Snov_3151
KEGG: xau:Xaut_1850 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
 
  
 0.472
Snov_1878
Peptidase M23; KEGG: xau:Xaut_4412 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
   
 0.424
Snov_3322
PFAM: Peptidase M23; KEGG: xau:Xaut_1905 peptidase M23B.
 
   
 0.424
Snov_1418
PFAM: Lytic transglycosylase catalytic; Sporulation domain protein; KEGG: met:M446_4519 lytic transglycosylase catalytic.
 
   
 0.415
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.404
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.