STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1707PFAM: inner-membrane translocator; KEGG: rpd:RPD_1119 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (307 aa)    
Predicted Functional Partners:
Snov_1706
PFAM: inner-membrane translocator; KEGG: bra:BRADO1746 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Snov_1705
KEGG: rpd:RPD_1121 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.996
Snov_2306
PFAM: inner-membrane translocator; KEGG: met:M446_0935 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.989
Snov_1708
PFAM: basic membrane lipoprotein; KEGG: bbt:BBta_2057 putative ABC transporter (substrate-binding protein).
 
 
 0.986
Snov_2307
KEGG: met:M446_3190 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.984
Snov_2308
PFAM: basic membrane lipoprotein; KEGG: met:M446_3191 basic membrane lipoprotein.
 
 
 0.970
Snov_2305
PFAM: inner-membrane translocator; KEGG: sil:SPO2805 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.916
Snov_1565
ABC transporter related protein; KEGG: rhi:NGR_b01270 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase.
     0.558
Snov_3558
KEGG: pde:Pden_4769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
     0.488
Snov_3670
Inner-membrane translocator; KEGG: mlo:mll7018 ribose ABC transporter, ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
     0.427
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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