STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2191KEGG: csa:Csal_0395 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein. (332 aa)    
Predicted Functional Partners:
Snov_3463
KEGG: rlg:Rleg_3796 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase.
  
  
 0.550
Snov_0659
PFAM: Mg2 transporter protein CorA family protein; KEGG: xau:Xaut_3316 Mg2 transporter protein CorA family protein.
 
   
 0.464
Snov_2194
KEGG: rce:RC1_0813 hypothetical protein.
 
   
 0.446
Snov_2969
KEGG: azc:AZC_4559 cation efflux protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
0.442
Snov_2206
PFAM: acriflavin resistance protein; KEGG: rce:RC1_0814 heavy metal efflux pump, CzcA family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 0.419
Snov_2192
PFAM: VacJ family lipoprotein; KEGG: gbe:GbCGDNIH1_0205 lipoprotein.
       0.411
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
  
 0.407
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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