STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2212PFAM: ATP12 ATPase; KEGG: mno:Mnod_7121 ATP12 ATPase. (256 aa)    
Predicted Functional Partners:
Snov_2213
KEGG: pla:Plav_2768 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.
      0.907
Snov_2211
PFAM: Domain of unknown function DUF1801; KEGG: reh:H16_B0885 hypothetical protein.
       0.671
Snov_2210
PFAM: Domain of unknown function DUF1801; KEGG: rme:Rmet_1765 hypothetical protein.
       0.666
Snov_1614
PFAM: ETC complex I subunit conserved region; KEGG: azc:AZC_1561 putative NADH dehydrogenase (ubiquinone) Fe-S protein 4.
  
     0.617
Snov_2786
PFAM: Methyltransferase type 11; KEGG: xau:Xaut_3105 methyltransferase type 11.
  
     0.613
Snov_1873
PFAM: protein of unknown function DUF498; KEGG: xau:Xaut_4311 hypothetical protein.
 
     0.586
Snov_2802
Cobalt chelatase, pCobT subunit; SMART: von Willebrand factor type A; TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: xau:Xaut_1878 cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit.
  
     0.562
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
    0.544
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
    0.541
Snov_3920
PFAM: alpha/beta hydrolase fold; KEGG: rpt:Rpal_0042 conserved hypothetical protein, putative alpha/beta hydrolase superfamily.
  
     0.537
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.