STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3130PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_4288 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa)    
Predicted Functional Partners:
Snov_3129
Transcriptional regulator, MerR family; KEGG: ttj:TTHA1155 mercuric resistance operon regulatory protein (MerR); PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR.
       0.560
Snov_2244
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro03213 3-oxoacyl-[acyl-carrier-protein] reductase.
 
   0.528
Snov_3131
KEGG: rsk:RSKD131_1931 hypothetical protein.
       0.506
Snov_2677
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mva:Mvan_5759 short-chain dehydrogenase/reductase SDR.
  
   0.403
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.