STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3556KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein. (319 aa)    
Predicted Functional Partners:
Snov_3557
PFAM: inner-membrane translocator; KEGG: rsq:Rsph17025_2684 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.991
Snov_3558
KEGG: pde:Pden_4769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.987
Snov_3670
Inner-membrane translocator; KEGG: mlo:mll7018 ribose ABC transporter, ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.979
Snov_3669
PFAM: inner-membrane translocator; KEGG: mlo:mll7017 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.950
Snov_1564
PFAM: inner-membrane translocator; KEGG: sit:TM1040_3252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.948
Snov_3671
KEGG: mlo:mll7019 hypothetical protein.
  
  
  0.914
Snov_1565
ABC transporter related protein; KEGG: rhi:NGR_b01270 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.908
Snov_0962
KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
  
 
 0.880
Snov_3560
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: rhi:NGR_c29470 putative endonuclease.
 
    0.879
Snov_3559
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rsh:Rsph17029_2906 oxidoreductase domain-containing protein.
 
  
 0.872
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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