STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3749Catalase related subgroup; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (383 aa)    
Predicted Functional Partners:
Snov_3750
PFAM: cytochrome B561; KEGG: bid:Bind_1272 cytochrome b561.
 
     0.945
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
    
 0.933
Snov_3891
D-lactate dehydrogenase (cytochrome); KEGG: azc:AZC_0083 glycolate oxidase subunit protein; PFAM: FAD linked oxidase domain protein.
   
 0.913
Snov_3893
PFAM: FAD linked oxidase domain protein; KEGG: xau:Xaut_1869 FAD linked oxidase domain-containing protein.
   
 0.913
Snov_3894
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: azc:AZC_0080 glycolate oxidase.
     
  0.900
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.779
Snov_0060
Peroxidase; KEGG: xau:Xaut_2363 peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like.
  
 
 0.738
Snov_0985
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: gdj:Gdia_2700 peroxiredoxin.
  
 
 0.738
Snov_2339
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.690
Snov_2160
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: azc:AZC_1865 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.665
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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