STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0284PFAM: GCN5-related N-acetyltransferase; KEGG: mab:MAB_2396 acetyltransferase. (335 aa)    
Predicted Functional Partners:
Srot_1482
Transcriptional regulator, XRE family; KEGG: mab:MAB_4084c transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.605
Srot_1470
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mab:MAB_3953 hypothetical protein.
  
     0.522
Srot_0364
KEGG: nfa:nfa21480 putative ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
  
     0.419
Srot_2376
Band 7 protein; KEGG: fal:FRAAL4044 membrane protease subunit stomatin/prohibitin-like protein; PFAM: band 7 protein; SMART: band 7 protein.
  
    0.414
Srot_0365
KEGG: nfa:nfa21470 putative ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
  
     0.404
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.