STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0766PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: mmi:MMAR_1293 rubredoxin RubB. (63 aa)    
Predicted Functional Partners:
Srot_0767
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rer:RER_21630 rubredoxin; Belongs to the rubredoxin family.
 
   
0.905
Srot_0765
PFAM: regulatory protein TetR; KEGG: mjl:Mjls_1371 TetR family transcriptional regulator.
  
  
 0.852
Srot_0768
KEGG: msm:MSMEG_1839 alkane 1-monooxygenase; PFAM: fatty acid desaturase.
  
  
 0.850
Srot_1770
KEGG: rha:RHA1_ro00862 nitrite reductase [NAD(P)H] large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
  
 
 0.828
Srot_0769
KEGG: bcv:Bcav_1446 hypothetical protein.
     
 0.406
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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