STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0824PFAM: superoxide dismutase copper/zinc binding; KEGG: rer:RER_14950 superoxide dismutase. (249 aa)    
Predicted Functional Partners:
Srot_1058
PFAM: Cytochrome b/b6 domain; KEGG: mab:MAB_1966c ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.999
Srot_1059
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gbr:Gbro_3057 Rieske (2Fe-2S) iron-sulphur domain protein.
    
 
 0.999
Srot_2289
KEGG: sen:SACE_5996 hypothetical protein.
    
   0.999
Srot_2790
PFAM: Heavy metal transport/detoxification protein; KEGG: ami:Amir_6797 heavy metal transport/detoxification protein.
   
 0.998
Srot_2958
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.946
Srot_1694
PFAM: Redoxin domain protein; KEGG: mva:Mvan_0866 redoxin domain-containing protein.
   
 0.900
Srot_1574
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nfa:nfa37890 putative alkylhydroperoxide reductase.
   
 
 0.859
Srot_0825
Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.845
Srot_1366
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 
 
 0.844
Srot_1061
KEGG: mva:Mvan_3557 cytochrome c oxidase, subunit III; PFAM: cytochrome c oxidase subunit III.
  
 
   0.831
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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