STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2260PFAM: Domain of unknown function DUF1990; KEGG: mva:Mvan_2554 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Srot_1468
KEGG: rop:ROP_69920 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
      
 0.615
Srot_2261
KEGG: mmi:MMAR_3543 hypothetical protein.
       0.551
Srot_2259
Hypothetical protein; KEGG: GJ18281 gene product from transcript GJ18281- RA.
       0.523
Srot_1783
PFAM: peptidase M48 Ste24p; KEGG: rer:RER_31030 hypothetical protein.
 
     0.419
Srot_0022
PFAM: Anti-sigma K factor RskA; KEGG: mva:Mvan_4928 hypothetical protein.
  
     0.416
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.