STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_2998PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_2807 major facilitator transporter. (539 aa)    
Predicted Functional Partners:
Srot_2997
PFAM: protein of unknown function DUF1396; KEGG: mva:Mvan_2692 hypothetical protein.
 
   
 0.950
Srot_2996
KEGG: rha:RHA1_ro04834 putative aminopeptidase 2; PFAM: peptidase M18 aminopeptidase I.
       0.601
Srot_1983
PFAM: major facilitator superfamily MFS_1; KEGG: rer:RER_15430 drug resistance efflux protein.
  
     0.598
Srot_1005
PFAM: major facilitator superfamily MFS_1; KEGG: rer:RER_55050 drug resistance efflux protein.
  
     0.579
Srot_2651
TIGRFAM: riboflavin synthase, alpha subunit; KEGG: nfa:nfa36010 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein.
  
  
 0.542
Srot_1333
Transport protein; KEGG: mab:MAB_2301 putative membrane protein, MmpL; TIGRFAM: Transport protein; PFAM: MMPL domain protein.
 
   0.497
Srot_2692
Transport protein; KEGG: mab:MAB_2303 putative membrane protein, MmpL; TIGRFAM: Transport protein; PFAM: MMPL domain protein.
 
   0.481
Srot_2527
PFAM: MMPL domain protein; KEGG: mpa:MAP3751 MmpL4_5.
 
   0.480
Srot_2999
KEGG: hypothetical protein.
       0.476
Srot_0875
PFAM: protein of unknown function DUF350; KEGG: svi:Svir_01250 protein of unknown function (DUF350).
  
     0.462
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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