Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VNG_1994C | dim2 | VNG_1994C | VNG_2227C | Conserved hypothetical protein; Vng1994c. | Conserved hypothetical protein; Vng2227c. | 0.891 |
VNG_1994C | rio2 | VNG_1994C | VNG_0179C | Conserved hypothetical protein; Vng1994c. | Conserved hypothetical protein; Vng0179c. | 0.999 |
VNG_1994C | rps11p | VNG_1994C | VNG_1134G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.988 |
VNG_1994C | rps15p | VNG_1994C | VNG_0790G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S15P; Rps15p. | 0.985 |
VNG_1994C | rps19p | VNG_1994C | VNG_1693G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.988 |
VNG_1994C | rps3e | VNG_1994C | VNG_0787G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S3E; Rps3e; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.991 |
VNG_1994C | rps3p | VNG_1994C | VNG_1697G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. | 0.969 |
VNG_1994C | rps4p | VNG_1994C | VNG_1133G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.985 |
VNG_1994C | rps5p | VNG_1994C | VNG_1715G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.984 |
VNG_1994C | rps6e | VNG_1994C | VNG_2514G | Conserved hypothetical protein; Vng1994c. | 30S ribosomal protein S6E; Rps6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.986 |
dim2 | VNG_1994C | VNG_2227C | VNG_1994C | Conserved hypothetical protein; Vng2227c. | Conserved hypothetical protein; Vng1994c. | 0.891 |
dim2 | rio2 | VNG_2227C | VNG_0179C | Conserved hypothetical protein; Vng2227c. | Conserved hypothetical protein; Vng0179c. | 0.986 |
dim2 | rps11p | VNG_2227C | VNG_1134G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.994 |
dim2 | rps15p | VNG_2227C | VNG_0790G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S15P; Rps15p. | 0.969 |
dim2 | rps3e | VNG_2227C | VNG_0787G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S3E; Rps3e; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.955 |
dim2 | rps3p | VNG_2227C | VNG_1697G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. | 0.940 |
dim2 | rps4p | VNG_2227C | VNG_1133G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.996 |
dim2 | rps5p | VNG_2227C | VNG_1715G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.948 |
dim2 | rps6e | VNG_2227C | VNG_2514G | Conserved hypothetical protein; Vng2227c. | 30S ribosomal protein S6E; Rps6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.997 |
rio2 | VNG_1994C | VNG_0179C | VNG_1994C | Conserved hypothetical protein; Vng0179c. | Conserved hypothetical protein; Vng1994c. | 0.999 |
page 1 of 6