STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_0050CConserved hypothetical protein; Vng0050c. (480 aa)    
Predicted Functional Partners:
gth7
Conserved hypothetical protein; Vng1059c.
 
  
 0.881
ugd
UDP-glucose dehydrogenase; Ugd.
  
  
 0.790
VNG_1060H
Hypothetical protein; Vng1060h.
  
  
 0.784
VNG_0991H
Hypothetical protein; Vng0991h.
      
 0.770
VNG_0011C
Conserved hypothetical protein; Vng0011c.
 
  
 0.730
mvaB
3-hydroxy-3-methylglutaryl-coenzyme A synthase; MvaB.
      
 0.722
udg1
UDP-glucose dehydrogenase; Udg1.
  
  
 0.717
uae
UDP-N-acetylglucosamine 2-epimerase; Uae.
  
  
 0.655
rpl44e
50S ribosomal protein L44E; Binds to the 23S rRNA.
      
 0.653
VNG_0049H
Hypothetical protein; Vng0049h.
       0.620
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.