STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_1524CConserved hypothetical protein; Vng1524c; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (458 aa)    
Predicted Functional Partners:
aldY2
Aldehyde dehydrogenase (retinol); AldY2.
 0.961
gabD
Succinate-semialdehyde dehydrogenase; GabD.
 
 0.955
aldY1
Aldehyde dehydrogenase (retinol); AldY1; Belongs to the aldehyde dehydrogenase family.
 
 0.955
gadD
Glutamate decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 0.950
VNG_0250C
Conserved hypothetical protein; Vng0250c.
     
  0.900
aspC1
Aspartate aminotransferase; AspC1.
  
 
 0.803
VNG_2170H
Hypothetical protein; Vng2170h.
 
  
 0.773
lysC
Aspartokinase II alpha subunit; LysC; Belongs to the aspartokinase family.
 
   
 0.763
VNG_0936C
Conserved hypothetical protein; Vng0936c.
  
  
 0.697
soxB
Sarcosine oxidase; SoxB.
 
  
 0.695
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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