STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_1658CConserved hypothetical protein; Vng1658c. (143 aa)    
Predicted Functional Partners:
VNG_1663C
Conserved hypothetical protein; Vng1663c.
  
    0.656
htr1
Htr1 transducer; Transduces signals from the phototaxis receptor sensory rhodopsin I (SR-I) to the flagellar motor. Responds to light changes through the variation of the level of methylation.
       0.455
sop1
Sensory rhodopsin I; Involved in the control of phototaxis. Mediates both photoattractant (in the orange light) and photophobic (in the near UV light) responses. The signal is then transmitted to the sensory rhodopsin I transducer (HTR-I) (By similarity).
       0.455
VNG_0306C
Conserved hypothetical protein; Vng0306c.
  
    0.414
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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