Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VNG_1446H | dpsA | VNG_1446H | VNG_2443G | Hypothetical protein; Vng1446h. | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | 0.680 |
| VNG_1446H | rnhA | VNG_1446H | VNG_0255C | Hypothetical protein; Vng1446h. | Conserved hypothetical protein; Nuclease that specifically degrades the RNA of RNA-DNA hybrids; seems to act exonucleolytically on RNA/DNA hybrids. Endonucleolytically removes RNA primers from the Okazaki fragments of lagging strand synthesis on its own. Complements the temperature- sensitive phenotype of an E.coli double rnhA/rnhB (RNase H) disruption mutant. | 0.779 |
| VNG_2508C | dpsA | VNG_2508C | VNG_2443G | Conserved hypothetical protein; Vng2508c. | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | 0.653 |
| cctA | dpsA | VNG_2226G | VNG_2443G | Thermosome subunit alpha; Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity; Belongs to the TCP-1 chaperonin family. | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | 0.774 |
| cctA | pgi | VNG_2226G | VNG_1992G | Thermosome subunit alpha; Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity; Belongs to the TCP-1 chaperonin family. | Peroxidase / catalase; Pgi. | 0.423 |
| cctA | sod1 | VNG_2226G | VNG_1190G | Thermosome subunit alpha; Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity; Belongs to the TCP-1 chaperonin family. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. | 0.483 |
| dpsA | VNG_1446H | VNG_2443G | VNG_1446H | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Hypothetical protein; Vng1446h. | 0.680 |
| dpsA | VNG_2508C | VNG_2443G | VNG_2508C | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Conserved hypothetical protein; Vng2508c. | 0.653 |
| dpsA | cctA | VNG_2443G | VNG_2226G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Thermosome subunit alpha; Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity; Belongs to the TCP-1 chaperonin family. | 0.774 |
| dpsA | idr2 | VNG_2443G | VNG_0835G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Iron-dependent repressor homolog; Idr2. | 0.616 |
| dpsA | msrA | VNG_2443G | VNG_1180G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.655 |
| dpsA | pgi | VNG_2443G | VNG_1992G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Peroxidase / catalase; Pgi. | 0.612 |
| dpsA | prk | VNG_2443G | VNG_0749G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Protein kinase; Prk. | 0.651 |
| dpsA | prkA | VNG_2443G | VNG_0748G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Kinase anchor protein; PrkA. | 0.633 |
| dpsA | rnhA | VNG_2443G | VNG_0255C | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Conserved hypothetical protein; Nuclease that specifically degrades the RNA of RNA-DNA hybrids; seems to act exonucleolytically on RNA/DNA hybrids. Endonucleolytically removes RNA primers from the Okazaki fragments of lagging strand synthesis on its own. Complements the temperature- sensitive phenotype of an E.coli double rnhA/rnhB (RNase H) disruption mutant. | 0.626 |
| dpsA | sod1 | VNG_2443G | VNG_1190G | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. | 0.682 |
| idr2 | dpsA | VNG_0835G | VNG_2443G | Iron-dependent repressor homolog; Idr2. | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | 0.616 |
| msrA | dpsA | VNG_1180G | VNG_2443G | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Starvation induced DNA binding protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity); Belongs to the Dps family. | 0.655 |
| msrA | pgi | VNG_1180G | VNG_1992G | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Peroxidase / catalase; Pgi. | 0.609 |
| msrA | sod1 | VNG_1180G | VNG_1190G | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. | 0.635 |
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