T1EPG0_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1EPG0_HELRO

Uncharacterized protein. (622 aa)

Predicted Functional Partners:

T1EGK8_HELRO

0.986

T1FU77_HELRO

0.981

T1FVM6_HELRO

0.939

T1EG94_HELRO

0.880

T1FVF6_HELRO

0.880

T1G2C6_HELRO

0.866

T1FVE4_HELRO

0.864

T1G5H8_HELRO

0.855

T1FTR6_HELRO

0.825

T1FMC3_HELRO

0.791

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EG94_HELRO	T1EGK8_HELRO	T1EG94	T1EGK8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.974
T1EG94_HELRO	T1EPG0_HELRO	T1EG94	T1EPG0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.880
T1EG94_HELRO	T1FMC3_HELRO	T1EG94	T1FMC3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.974
T1EG94_HELRO	T1FTR6_HELRO	T1EG94	T1FTR6	Ubiquitin-like domain-containing protein.	Tower domain-containing protein.	0.505
T1EG94_HELRO	T1FU77_HELRO	T1EG94	T1FU77	Ubiquitin-like domain-containing protein.	FANCI_S4 domain-containing protein.	0.963
T1EG94_HELRO	T1FVE4_HELRO	T1EG94	T1FVE4	Ubiquitin-like domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.552
T1EG94_HELRO	T1FVF6_HELRO	T1EG94	T1FVF6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.999
T1EG94_HELRO	T1FVM6_HELRO	T1EG94	T1FVM6	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.908
T1EG94_HELRO	T1G2C6_HELRO	T1EG94	T1G2C6	Ubiquitin-like domain-containing protein.	NTF2 domain-containing protein.	0.706
T1EG94_HELRO	T1G5H8_HELRO	T1EG94	T1G5H8	Ubiquitin-like domain-containing protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
T1EGK8_HELRO	T1EG94_HELRO	T1EGK8	T1EG94	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.974
T1EGK8_HELRO	T1EPG0_HELRO	T1EGK8	T1EPG0	Uncharacterized protein.	Uncharacterized protein.	0.986
T1EGK8_HELRO	T1FMC3_HELRO	T1EGK8	T1FMC3	Uncharacterized protein.	Uncharacterized protein.	0.999
T1EGK8_HELRO	T1FTR6_HELRO	T1EGK8	T1FTR6	Uncharacterized protein.	Tower domain-containing protein.	0.808
T1EGK8_HELRO	T1FU77_HELRO	T1EGK8	T1FU77	Uncharacterized protein.	FANCI_S4 domain-containing protein.	0.987
T1EGK8_HELRO	T1FVE4_HELRO	T1EGK8	T1FVE4	Uncharacterized protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.985
T1EGK8_HELRO	T1FVF6_HELRO	T1EGK8	T1FVF6	Uncharacterized protein.	Uncharacterized protein.	0.970
T1EGK8_HELRO	T1FVM6_HELRO	T1EGK8	T1FVM6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.771
T1EGK8_HELRO	T1G2C6_HELRO	T1EGK8	T1G2C6	Uncharacterized protein.	NTF2 domain-containing protein.	0.999
T1EGK8_HELRO	T1G5H8_HELRO	T1EGK8	T1G5H8	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999