T1F5J4_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1F5J4_HELRO

Uncharacterized protein. (377 aa)

Predicted Functional Partners:

T1FTF5_HELRO

0.990

T1FN01_HELRO

0.960

T1EJG6_HELRO

0.954

T1FXX0_HELRO

0.954

T1FY23_HELRO

0.954

T1EFU3_HELRO

0.844

T1G5I0_HELRO

0.810

T1FT05_HELRO

0.782

T1FZA0_HELRO

0.762

T1FCF8_HELRO

0.743

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EFU3_HELRO	T1EJG6_HELRO	T1EFU3	T1EJG6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RanBD1 domain-containing protein.	0.980
T1EFU3_HELRO	T1F5J4_HELRO	T1EFU3	T1F5J4	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.844
T1EFU3_HELRO	T1FN01_HELRO	T1EFU3	T1FN01	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.815
T1EFU3_HELRO	T1FT05_HELRO	T1EFU3	T1FT05	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Peptidase C50 domain-containing protein.	0.779
T1EFU3_HELRO	T1FTF5_HELRO	T1EFU3	T1FTF5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.996
T1EFU3_HELRO	T1FXX0_HELRO	T1EFU3	T1FXX0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RanBD1 domain-containing protein.	0.980
T1EFU3_HELRO	T1FY23_HELRO	T1EFU3	T1FY23	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RanBD1 domain-containing protein.	0.980
T1EFU3_HELRO	T1G5I0_HELRO	T1EFU3	T1G5I0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.436
T1EJG6_HELRO	T1EFU3_HELRO	T1EJG6	T1EFU3	RanBD1 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.980
T1EJG6_HELRO	T1F5J4_HELRO	T1EJG6	T1F5J4	RanBD1 domain-containing protein.	Uncharacterized protein.	0.954
T1EJG6_HELRO	T1FN01_HELRO	T1EJG6	T1FN01	RanBD1 domain-containing protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.971
T1EJG6_HELRO	T1FT05_HELRO	T1EJG6	T1FT05	RanBD1 domain-containing protein.	Peptidase C50 domain-containing protein.	0.974
T1EJG6_HELRO	T1FTF5_HELRO	T1EJG6	T1FTF5	RanBD1 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.718
T1EJG6_HELRO	T1FXX0_HELRO	T1EJG6	T1FXX0	RanBD1 domain-containing protein.	RanBD1 domain-containing protein.	0.520
T1EJG6_HELRO	T1FY23_HELRO	T1EJG6	T1FY23	RanBD1 domain-containing protein.	RanBD1 domain-containing protein.	0.511
T1F5J4_HELRO	T1EFU3_HELRO	T1F5J4	T1EFU3	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.844
T1F5J4_HELRO	T1EJG6_HELRO	T1F5J4	T1EJG6	Uncharacterized protein.	RanBD1 domain-containing protein.	0.954
T1F5J4_HELRO	T1FCF8_HELRO	T1F5J4	T1FCF8	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.743
T1F5J4_HELRO	T1FN01_HELRO	T1F5J4	T1FN01	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.960
T1F5J4_HELRO	T1FT05_HELRO	T1F5J4	T1FT05	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.782