T1FMN9_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FMN9_HELRO

Cir_N domain-containing protein. (240 aa)

Predicted Functional Partners:

T1FN60_HELRO

0.754

T1FSQ4_HELRO

0.727

T1FVL3_HELRO

0.725

T1FAI0_HELRO

0.713

T1G8Y5_HELRO

0.713

T1G9A3_HELRO

0.705

T1FRD5_HELRO

0.703

T1FRH2_HELRO

0.702

T1FU27_HELRO

0.700

T1FM63_HELRO

0.698

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1FAI0_HELRO	T1FM63_HELRO	T1FAI0	T1FM63	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.928
T1FAI0_HELRO	T1FMN9_HELRO	T1FAI0	T1FMN9	WD_REPEATS_REGION domain-containing protein.	Cir_N domain-containing protein.	0.713
T1FAI0_HELRO	T1FVL3_HELRO	T1FAI0	T1FVL3	WD_REPEATS_REGION domain-containing protein.	Slu7 domain-containing protein.	0.974
T1FAI0_HELRO	T1G8Y5_HELRO	T1FAI0	T1G8Y5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.900
T1FAI0_HELRO	T1G9A3_HELRO	T1FAI0	T1G9A3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.631
T1FM63_HELRO	T1FAI0_HELRO	T1FM63	T1FAI0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.928
T1FM63_HELRO	T1FMN9_HELRO	T1FM63	T1FMN9	Uncharacterized protein.	Cir_N domain-containing protein.	0.698
T1FM63_HELRO	T1FVL3_HELRO	T1FM63	T1FVL3	Uncharacterized protein.	Slu7 domain-containing protein.	0.954
T1FM63_HELRO	T1G8Y5_HELRO	T1FM63	T1G8Y5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.928
T1FMN9_HELRO	T1FAI0_HELRO	T1FMN9	T1FAI0	Cir_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.713
T1FMN9_HELRO	T1FM63_HELRO	T1FMN9	T1FM63	Cir_N domain-containing protein.	Uncharacterized protein.	0.698
T1FMN9_HELRO	T1FN60_HELRO	T1FMN9	T1FN60	Cir_N domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.754
T1FMN9_HELRO	T1FRD5_HELRO	T1FMN9	T1FRD5	Cir_N domain-containing protein.	RanGAP1_C domain-containing protein.	0.703
T1FMN9_HELRO	T1FRH2_HELRO	T1FMN9	T1FRH2	Cir_N domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.702
T1FMN9_HELRO	T1FSQ4_HELRO	T1FMN9	T1FSQ4	Cir_N domain-containing protein.	Peptidase S59 domain-containing protein.	0.727
T1FMN9_HELRO	T1FU27_HELRO	T1FMN9	T1FU27	Cir_N domain-containing protein.	Uncharacterized protein.	0.700
T1FMN9_HELRO	T1FVL3_HELRO	T1FMN9	T1FVL3	Cir_N domain-containing protein.	Slu7 domain-containing protein.	0.725
T1FMN9_HELRO	T1G8Y5_HELRO	T1FMN9	T1G8Y5	Cir_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.713
T1FMN9_HELRO	T1G9A3_HELRO	T1FMN9	T1G9A3	Cir_N domain-containing protein.	Uncharacterized protein.	0.705
T1FN60_HELRO	T1FMN9_HELRO	T1FN60	T1FMN9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Cir_N domain-containing protein.	0.754