T1FMP6_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FMP6_HELRO

Nop domain-containing protein. (495 aa)

Predicted Functional Partners:

T1EDB4_HELRO

0.999

T1EDY0_HELRO

0.999

T1FM61_HELRO

0.999

T1G2W5_HELRO

0.999

T1G9L3_HELRO

0.999

T1ECZ7_HELRO

0.998

T1G930_HELRO

0.998

T1EDY3_HELRO

0.997

T1FNP7_HELRO

0.994

T1G1Q3_HELRO

0.994

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ECZ7_HELRO	T1EDB4_HELRO	T1ECZ7	T1EDB4	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.997
T1ECZ7_HELRO	T1EDY0_HELRO	T1ECZ7	T1EDY0	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.998
T1ECZ7_HELRO	T1EDY3_HELRO	T1ECZ7	T1EDY3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Tr-type G domain-containing protein.	0.998
T1ECZ7_HELRO	T1FM61_HELRO	T1ECZ7	T1FM61	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.974
T1ECZ7_HELRO	T1FMP6_HELRO	T1ECZ7	T1FMP6	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nop domain-containing protein.	0.998
T1ECZ7_HELRO	T1FNP7_HELRO	T1ECZ7	T1FNP7	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	MFAP1 domain-containing protein.	0.627
T1ECZ7_HELRO	T1G1Q3_HELRO	T1ECZ7	T1G1Q3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.981
T1ECZ7_HELRO	T1G2W5_HELRO	T1ECZ7	T1G2W5	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	TPR_REGION domain-containing protein.	0.997
T1ECZ7_HELRO	T1G930_HELRO	T1ECZ7	T1G930	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.995
T1ECZ7_HELRO	T1G9L3_HELRO	T1ECZ7	T1G9L3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.998
T1EDB4_HELRO	T1ECZ7_HELRO	T1EDB4	T1ECZ7	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
T1EDB4_HELRO	T1EDY0_HELRO	T1EDB4	T1EDY0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
T1EDB4_HELRO	T1EDY3_HELRO	T1EDB4	T1EDY3	Uncharacterized protein.	Tr-type G domain-containing protein.	0.998
T1EDB4_HELRO	T1FM61_HELRO	T1EDB4	T1FM61	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.998
T1EDB4_HELRO	T1FMP6_HELRO	T1EDB4	T1FMP6	Uncharacterized protein.	Nop domain-containing protein.	0.999
T1EDB4_HELRO	T1FNP7_HELRO	T1EDB4	T1FNP7	Uncharacterized protein.	MFAP1 domain-containing protein.	0.997
T1EDB4_HELRO	T1G1Q3_HELRO	T1EDB4	T1G1Q3	Uncharacterized protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.998
T1EDB4_HELRO	T1G2W5_HELRO	T1EDB4	T1G2W5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
T1EDB4_HELRO	T1G930_HELRO	T1EDB4	T1G930	Uncharacterized protein.	MPN domain-containing protein.	0.997
T1EDB4_HELRO	T1G9L3_HELRO	T1EDB4	T1G9L3	Uncharacterized protein.	Uncharacterized protein.	0.998