T1FQQ6_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FQQ6_HELRO

Uncharacterized protein. (405 aa)

Predicted Functional Partners:

T1F3Q4_HELRO

0.728

T1G0E9_HELRO

0.725

T1FXC4_HELRO

0.721

T1FJI2_HELRO

0.711

T1G6I8_HELRO

0.667

T1G570_HELRO

0.651

T1EH42_HELRO

0.650

T1ERY8_HELRO

0.644

T1G7X7_HELRO

0.643

T1EGS0_HELRO

0.628

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EGS0_HELRO	T1EH42_HELRO	T1EGS0	T1EH42	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.994
T1EGS0_HELRO	T1ERY8_HELRO	T1EGS0	T1ERY8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.999
T1EGS0_HELRO	T1F3Q4_HELRO	T1EGS0	T1F3Q4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.951
T1EGS0_HELRO	T1FJI2_HELRO	T1EGS0	T1FJI2	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	SpoU_methylase domain-containing protein.	0.932
T1EGS0_HELRO	T1FQQ6_HELRO	T1EGS0	T1FQQ6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.628
T1EGS0_HELRO	T1FXC4_HELRO	T1EGS0	T1FXC4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	TRUD domain-containing protein.	0.903
T1EGS0_HELRO	T1G0E9_HELRO	T1EGS0	T1G0E9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.906
T1EGS0_HELRO	T1G570_HELRO	T1EGS0	T1G570	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.945
T1EGS0_HELRO	T1G6I8_HELRO	T1EGS0	T1G6I8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.978
T1EGS0_HELRO	T1G7X7_HELRO	T1EGS0	T1G7X7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.998
T1EH42_HELRO	T1EGS0_HELRO	T1EH42	T1EGS0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.994
T1EH42_HELRO	T1ERY8_HELRO	T1EH42	T1ERY8	Uncharacterized protein.	Uncharacterized protein.	0.997
T1EH42_HELRO	T1F3Q4_HELRO	T1EH42	T1F3Q4	Uncharacterized protein.	Uncharacterized protein.	0.976
T1EH42_HELRO	T1FJI2_HELRO	T1EH42	T1FJI2	Uncharacterized protein.	SpoU_methylase domain-containing protein.	0.966
T1EH42_HELRO	T1FQQ6_HELRO	T1EH42	T1FQQ6	Uncharacterized protein.	Uncharacterized protein.	0.650
T1EH42_HELRO	T1FXC4_HELRO	T1EH42	T1FXC4	Uncharacterized protein.	TRUD domain-containing protein.	0.903
T1EH42_HELRO	T1G0E9_HELRO	T1EH42	T1G0E9	Uncharacterized protein.	Uncharacterized protein.	0.903
T1EH42_HELRO	T1G570_HELRO	T1EH42	T1G570	Uncharacterized protein.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.968
T1EH42_HELRO	T1G6I8_HELRO	T1EH42	T1G6I8	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.958
T1EH42_HELRO	T1G7X7_HELRO	T1EH42	T1G7X7	Uncharacterized protein.	Uncharacterized protein.	0.998