T1FRP1_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FRP1_HELRO

PHB domain-containing protein. (323 aa)

Predicted Functional Partners:

T1G1B8_HELRO

0.845

T1FPZ7_HELRO

0.797

T1ECZ9_HELRO

0.704

T1FYZ5_HELRO

0.686

T1ESA4_HELRO

0.669

T1G6V6_HELRO

0.668

T1FVF6_HELRO

0.659

T1EF71_HELRO

0.658

T1FQ54_HELRO

0.656

T1FNV8_HELRO

0.654

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ECZ9_HELRO	T1ESA4_HELRO	T1ECZ9	T1ESA4	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.990
T1ECZ9_HELRO	T1FPZ7_HELRO	T1ECZ9	T1FPZ7	Uncharacterized protein.	RING-type domain-containing protein.	0.926
T1ECZ9_HELRO	T1FRP1_HELRO	T1ECZ9	T1FRP1	Uncharacterized protein.	PHB domain-containing protein.	0.704
T1ECZ9_HELRO	T1FVF6_HELRO	T1ECZ9	T1FVF6	Uncharacterized protein.	Uncharacterized protein.	0.653
T1ECZ9_HELRO	T1FYZ5_HELRO	T1ECZ9	T1FYZ5	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.946
T1ECZ9_HELRO	T1G1B8_HELRO	T1ECZ9	T1G1B8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.403
T1EF71_HELRO	T1FQ54_HELRO	T1EF71	T1FQ54	Uncharacterized protein.	Uncharacterized protein.	0.499
T1EF71_HELRO	T1FRP1_HELRO	T1EF71	T1FRP1	Uncharacterized protein.	PHB domain-containing protein.	0.658
T1ESA4_HELRO	T1ECZ9_HELRO	T1ESA4	T1ECZ9	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.990
T1ESA4_HELRO	T1FPZ7_HELRO	T1ESA4	T1FPZ7	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.776
T1ESA4_HELRO	T1FRP1_HELRO	T1ESA4	T1FRP1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	PHB domain-containing protein.	0.669
T1ESA4_HELRO	T1FVF6_HELRO	T1ESA4	T1FVF6	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.660
T1ESA4_HELRO	T1FYZ5_HELRO	T1ESA4	T1FYZ5	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.996
T1ESA4_HELRO	T1G1B8_HELRO	T1ESA4	T1G1B8	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	TPR_REGION domain-containing protein.	0.663
T1FNV8_HELRO	T1FRP1_HELRO	T1FNV8	T1FRP1	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	PHB domain-containing protein.	0.654
T1FPZ7_HELRO	T1ECZ9_HELRO	T1FPZ7	T1ECZ9	RING-type domain-containing protein.	Uncharacterized protein.	0.926
T1FPZ7_HELRO	T1ESA4_HELRO	T1FPZ7	T1ESA4	RING-type domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.776
T1FPZ7_HELRO	T1FRP1_HELRO	T1FPZ7	T1FRP1	RING-type domain-containing protein.	PHB domain-containing protein.	0.797
T1FPZ7_HELRO	T1FVF6_HELRO	T1FPZ7	T1FVF6	RING-type domain-containing protein.	Uncharacterized protein.	0.726
T1FPZ7_HELRO	T1FYZ5_HELRO	T1FPZ7	T1FYZ5	RING-type domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.844