STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD57563.1Competence protein ComEC. (680 aa)    
Predicted Functional Partners:
SDD69712.1
DNA processing protein.
 
  
 0.902
SDD61469.1
comF family protein.
 
  
 0.866
SDE63603.1
Magnesium chelatase family protein.
 
  
 0.777
SDE86546.1
DNA uptake protein ComE.
 
  
 0.718
SDE62026.1
Protein of unknown function.
  
     0.582
SDE86646.1
Protein of unknown function.
  
     0.519
SDD57528.1
Cell wall-associated hydrolase, NlpC family.
       0.490
SDD59526.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.478
SDE97160.1
Exonuclease RecJ.
 
   
 0.461
SDE67887.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
 
   
 0.458
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.