STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0415Sporulation stage III protein AB; InterPro IPR014198; KEGG: swo:Swol_0551 hypothetical protein; PFAM: Sporulation stage III protein AB; SPTR: Q0AZG9 Putative uncharacterized protein; PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB. (176 aa)    
Predicted Functional Partners:
Slip_0414
Stage III sporulation protein AA; COGs: COG3854 conserved hypothetical protein; InterPro IPR014217:IPR003593; KEGG: swo:Swol_0550 stage III sporulation protein spoIIIAA; SMART: AAA ATPase; SPTR: Q0AZH0 Stage III sporulation protein spoIIIAA; TIGRFAM: stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA.
 
  
 0.997
Slip_0416
Stage III sporulation protein AC; InterPro IPR009570; KEGG: swo:Swol_0552 hypothetical protein; PFAM: Stage III sporulation AC family protein; SPTR: Q0AZG8 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AC.
 
  
 0.985
Slip_0418
Stage III sporulation protein AE; InterPro IPR014194; KEGG: swo:Swol_0554 hypothetical protein; PFAM: Sporulation stage III protein AE; SPTR: Q0AZG6 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
 
  
 0.975
Slip_0417
Stage III sporulation protein AD; InterPro IPR014211; KEGG: swo:Swol_0553 putative sporulation protein; PFAM: Sporulation stage III protein AD; SPTR: Q0AZG7 Putative sporulation protein; TIGRFAM: stage III sporulation protein AD; PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AD.
 
  
 0.972
Slip_0420
KEGG: swo:Swol_0556 hypothetical protein; SPTR: Q0AZG4 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AG.
 
  
 0.958
Slip_0419
Sporulation stage III protein AF; InterPro IPR014245; KEGG: swo:Swol_0555 hypothetical protein; PFAM: Sporulation stage III protein AF; SPTR: Q0AZG5 Putative uncharacterized protein; PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF.
 
  
 0.921
Slip_0491
Stage II sporulation protein M; InterPro IPR014196:IPR018062:IPR002798; KEGG: swo:Swol_0605 uncharacterized membrane protein; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Q0AZC0 Uncharacterized membrane protein; TIGRFAM: stage II sporulation protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
  
 0.905
Slip_0314
Sigma 54 interacting domain protein; COGs: COG1067 ATP-dependent protease; InterProIPR002078:IPR003593:IPR008268:IPR001984:IPR 020568:IPR003959:IPR008269:IPR014251; KEGG: hor:Hore_14920 sporulation protease LonB; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: AAA ATPase; SPTR: B8CY72 Sporulation protease LonB; TIGRFAM: ATP-dependent protease LonB; PFAM: ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease LonB; lon-related putative AT [...]
  
    0.802
Slip_1642
Sporulation protein YqfC; InterPro IPR009877; KEGG: swo:Swol_1568 hypothetical protein; PFAM: protein of unknown function DUF1429; SPTR: Q0AWN3 Putative uncharacterized protein; TIGRFAM: sporulation protein YqfC; PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
  
  
 0.797
Slip_1641
Sporulation protein YqfD; InterPro IPR010690; KEGG: swo:Swol_1567 putative stage IV sporulation YqfD; PFAM: putative stage IV sporulation YqfD; SPTR: Q0AWN4 Putative stage IV sporulation YqfD; TIGRFAM: sporulation protein YqfD; PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD.
  
    0.748
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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